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VMD - Visual Molecular Dynamics Alternatives

VMD - Visual Molecular Dynamics Alternatives

VMD - Visual Molecular Dynamics

VMD is capable of working with very large structures up to the limits of available memory. The 64-bit versions of VMD allow large-size and long-timescale simulation trajectories to be loaded into physical memory and accommodate large volumetric datasets. The 64 million atom HIV capsid simulation described in the May 30, 2013 issue of Nature is a first-class example of what can be done with VMD on an appropriately equipped graphics workstation. The HIV-1 model was prepared for simulation using the structure building tools and scripting features of VMD were later used for trajectory analysis. The all-atom structure of the HIV-1 capsid shown on the Nature cover was rendered within VMD using the internal Tachyon ray tracing engine, and was then composited with an artistic representation of the viral envelope and the Nature cover text.

Best VMD - Visual Molecular Dynamics Alternatives

Looking for other VMD - Visual Molecular Dynamics-like programs? We've rounded up our favorites VMD - Visual Molecular Dynamics alternatives. Try any one of these fan favorites to see if they'll support your system and meet your specific needs.

Jmol

Jmol

FreeOpen SourceMacWindowsLinux

Jmol is a free, open source molecule viewer for students, educators, and researchers in chemistry and biochemistry. It is cross-platform, running on Windows, Mac OS X...

Rasmol

Rasmol

FreeOpen SourceMacWindowsLinux

RasMol is a computer program written for molecular graphics visualization intended and used primarily for the depiction and exploration of biological macromolecule...

UCSF Chimera

UCSF Chimera

FreeMacWindowsLinux

UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data.

RasTop

RasTop

FreeOpen SourceMacWindowsLinuxWine

RasTop is a molecular visualization software adapted from the program RasMol, which was initially developed by Roger Sayle. RasTop is particularly adapted for...

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