Wikibase is the software that runs Wikidata, but is also usable for other projects beyond that. Wikibase allows the collaborative editing of structured data on top of MediaWiki. It is optimized for graph-like, schema-poor data, not for tabular and strongly pre-structured data.
Looking for a program that is like Wikibase? We have our top picks here. If you need another program that has some of the features of Wikibase on your device, read what we recommend in this post.
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NetworkX is a Python language software package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.
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