Cytoscape Alternatives
Cytoscape
Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of plugins are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
Cytoscape supports many use cases in molecular and systems biology, genomics, and proteomics:
Load molecular and genetic interaction data sets in many formats
Project and integrate global datasets and functional annotations
Establish powerful visual mappings across these data
Perform advanced analysis and modeling using Cytoscape plugins
Visualize and analyze human-curated pathway datasets such as Reactome or KEGG.
Best Cytoscape Alternatives
Lets compare the best apps like Cytoscape, shall we? We've picked out some really great programs for your platform. Check them out!
Gephi
FreeOpen SourceMacWindowsLinuxGephi is an open-source software for visualizing and analyzing large networks graphs. .
Features:
- 3d renderer
- Exploration
- Filtering
- Graphs
- Interactive Graph Exploration
Linkurious
CommercialWebAn on-premise graph visualization and analysis software to investigate complex connected data.
Features:
- Data analytics
- Fraud detection
- Graph database
- Graphs
NodeXL
FreeOpen SourceWindowsMicrosoft Office ExcelNodeXL is a free, open-source template for Microsoft® Excel® 2007 and 2010 that makes it easy to explore network graphs. With NodeXL, you can enter a network...
Polinode
CommercialWebPolinode is a tool that makes it easy to perform powerful network analysis. You can either upload your own network data or use the integrated relationship-based survey...
Features:
- Network Analysis
- Real time collaboration
- Software as a Service
Wandora
FreeOpen SourceMacWindowsLinuxWandora is a general purpose information extraction, management and publishing application based on Topic Maps and Java. Wandora has graphical user interface, layered...
KeyLines Graph Visualization Toolkit
CommercialMacWindowsLinuxWebAndroidiPhoneAndroid TabletiPadKeyLines is a JavaScript toolkit for building high-performance graph visualization applications quickly.
Features:
- Diagrams
- Flow chart
- Geospatial analysis
- Graphs
Pathomx
FreeOpen SourceMacWindowsPathomx is a workflow-based tool for the analysis and visualisation of experimental data. Initially created as a tool for metabolomic data analysis is has been extended...
Neoclipse
FreeOpen SourceWindowsNeoclipse is a standalone workbench application to interact with Neo4j (database directory or server). It supports Cypher, index searches, visualisation, graph updates.
Features:
- Diagrams
- Graphs
Tabnetviz
FreeOpen SourceMacWindowsLinuxPythontable-based network visualizer, a command-line tool for producing static network visualizations from a node table and an edge table.
Features:
- Command line
- Network Analysis
Touchgraph Navigator
CommercialWindowsLinuxTouchGraph is the producer of data visualization software TouchGraph Navigator 2. With TouchGraph Navigator 2, users can upload data and create "interactive network...
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Cytoscape Reviews
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