Cytoscape Alternatives
Cytoscape
Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of plugins are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
Cytoscape supports many use cases in molecular and systems biology, genomics, and proteomics:
Load molecular and genetic interaction data sets in many formats
Project and integrate global datasets and functional annotations
Establish powerful visual mappings across these data
Perform advanced analysis and modeling using Cytoscape plugins
Visualize and analyze human-curated pathway datasets such as Reactome or KEGG.
Best Cytoscape Alternatives for Python
Looking for a program that is like Cytoscape? We have our top picks here. If you need another program that has some of the features of Cytoscape on your device, read what we recommend in this post.
Tabnetviz
FreeOpen SourceMacWindowsLinuxPythontable-based network visualizer, a command-line tool for producing static network visualizations from a node table and an edge table.
Features:
- Command line
- Network Analysis
Cytoscape Reviews
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