Cytoscape Alternatives
Cytoscape
Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of plugins are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
Cytoscape supports many use cases in molecular and systems biology, genomics, and proteomics:
Load molecular and genetic interaction data sets in many formats
Project and integrate global datasets and functional annotations
Establish powerful visual mappings across these data
Perform advanced analysis and modeling using Cytoscape plugins
Visualize and analyze human-curated pathway datasets such as Reactome or KEGG.
Best Free Cytoscape Alternatives
Are you trying to find the best programs like Cytoscape? Have a look at this post and weigh in on your thoughts. Cool!
Gephi
FreeOpen SourceMacWindowsLinuxGephi is an open-source software for visualizing and analyzing large networks graphs. .
Features:
- 3d renderer
- Exploration
- Filtering
- Graphs
- Interactive Graph Exploration
NodeXL
FreeOpen SourceWindowsMicrosoft Office ExcelNodeXL is a free, open-source template for Microsoft® Excel® 2007 and 2010 that makes it easy to explore network graphs. With NodeXL, you can enter a network...
Wandora
FreeOpen SourceMacWindowsLinuxWandora is a general purpose information extraction, management and publishing application based on Topic Maps and Java. Wandora has graphical user interface, layered...
Pathomx
FreeOpen SourceMacWindowsPathomx is a workflow-based tool for the analysis and visualisation of experimental data. Initially created as a tool for metabolomic data analysis is has been extended...
Neoclipse
FreeOpen SourceWindowsNeoclipse is a standalone workbench application to interact with Neo4j (database directory or server). It supports Cypher, index searches, visualisation, graph updates.
Features:
- Diagrams
- Graphs
Tabnetviz
FreeOpen SourceMacWindowsLinuxPythontable-based network visualizer, a command-line tool for producing static network visualizations from a node table and an edge table.
Features:
- Command line
- Network Analysis
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Cytoscape Reviews
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