Cytoscape Alternatives
Cytoscape
Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of plugins are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
Cytoscape supports many use cases in molecular and systems biology, genomics, and proteomics:
Load molecular and genetic interaction data sets in many formats
Project and integrate global datasets and functional annotations
Establish powerful visual mappings across these data
Perform advanced analysis and modeling using Cytoscape plugins
Visualize and analyze human-curated pathway datasets such as Reactome or KEGG.
Best Cytoscape Alternatives for Mac
If you want similar software to Cytoscape, we have a list for that. Are there Cytoscape alternatives out there? Let's find out.
Gephi
FreeOpen SourceMacWindowsLinuxGephi is an open-source software for visualizing and analyzing large networks graphs. .
Features:
- 3d renderer
- Exploration
- Filtering
- Graphs
- Interactive Graph Exploration
Wandora
FreeOpen SourceMacWindowsLinuxWandora is a general purpose information extraction, management and publishing application based on Topic Maps and Java. Wandora has graphical user interface, layered...
KeyLines Graph Visualization Toolkit
CommercialMacWindowsLinuxWebAndroidiPhoneAndroid TabletiPadKeyLines is a JavaScript toolkit for building high-performance graph visualization applications quickly.
Features:
- Diagrams
- Flow chart
- Geospatial analysis
- Graphs
Pathomx
FreeOpen SourceMacWindowsPathomx is a workflow-based tool for the analysis and visualisation of experimental data. Initially created as a tool for metabolomic data analysis is has been extended...
Tabnetviz
FreeOpen SourceMacWindowsLinuxPythontable-based network visualizer, a command-line tool for producing static network visualizations from a node table and an edge table.
Features:
- Command line
- Network Analysis
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