Cytoscape Alternatives
Cytoscape
Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of plugins are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
Cytoscape supports many use cases in molecular and systems biology, genomics, and proteomics:
Load molecular and genetic interaction data sets in many formats
Project and integrate global datasets and functional annotations
Establish powerful visual mappings across these data
Perform advanced analysis and modeling using Cytoscape plugins
Visualize and analyze human-curated pathway datasets such as Reactome or KEGG.
Best Cytoscape Alternatives for Linux
Are you still using Cytoscape? Let's compare it to the best other options below. Maybe one of these Cytoscape alternatives will work on your device, too.
Gephi
FreeOpen SourceMacWindowsLinuxGephi is an open-source software for visualizing and analyzing large networks graphs. .
Features:
- 3d renderer
- Exploration
- Filtering
- Graphs
- Interactive Graph Exploration
Wandora
FreeOpen SourceMacWindowsLinuxWandora is a general purpose information extraction, management and publishing application based on Topic Maps and Java. Wandora has graphical user interface, layered...
KeyLines Graph Visualization Toolkit
CommercialMacWindowsLinuxWebAndroidiPhoneAndroid TabletiPadKeyLines is a JavaScript toolkit for building high-performance graph visualization applications quickly.
Features:
- Diagrams
- Flow chart
- Geospatial analysis
- Graphs
Tabnetviz
FreeOpen SourceMacWindowsLinuxPythontable-based network visualizer, a command-line tool for producing static network visualizations from a node table and an edge table.
Features:
- Command line
- Network Analysis
Touchgraph Navigator
CommercialWindowsLinuxTouchGraph is the producer of data visualization software TouchGraph Navigator 2. With TouchGraph Navigator 2, users can upload data and create "interactive network...
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